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Different colors are assigned to different transmitters so you can tell them apart. If you "hover" the cursor over a point, a tooltip will pop up that shows you which transmitter was seen there and what position was measured.
Normally, bad measurements are just drawn as points, without connecting them to the next measurement via a line. They often carry very large position values, and will result in lines running off the panel. If you do want to see them connected, check the "Show error points" checkbox.
These regions are displayed as blocks of color, possibly overlapping.
To get the exact coordinates of a region, hover the cursor over it. After a short time, a tooltip will display the coordinates of the corners.
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